Misc Cleanup

Put things from misc into appropriate postitions.
Put a few links into their correct sections, in my opinion.

free-programming-books.md

@@ -126,13 +126,17 @@
 * [The Great Tree List Recursion Problem](http://cslibrary.stanford.edu/109/TreeListRecursion.pdf)
 * [Matters Computational](http://www.jjj.de/fxt/#fxtbook)
 * [Algorithmic Graph Theory](http://code.google.com/p/graphbook/)
+* [Foundations of Computer Science](http://infolab.stanford.edu/~ullman/focs.html) - Al Aho and Jeff Ullman
+* [A Field Guide To Genetic Programming](http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/toc.html)
+* [The Art of Computer Programming](http://www.cs.utsa.edu/~wagner/knuth/) (fascicles, mostly volume 4)
+* [Programming Pearls](http://cs.bell-labs.com/cm/cs/pearls/)
 
 ####Theoretical Computer Science
 * [Structure and Interpretation of Computer Programs](http://mitpress.mit.edu/sicp/)
-* [Foundations of Computer Science](http://infolab.stanford.edu/~ullman/focs.html) - Al Aho and Jeff Ullman
 * [Programming Languages: Application and Interpretation](http://www.cs.brown.edu/~sk/Publications/Books/ProgLangs/)
 * [Introduction to Computing](http://www.computingbook.org/)
 * [An Introduction to the Theory of Computation](http://www.cse.ohio-state.edu/~gurari/theory-bk/theory-bk.html)
+* [Think Complexity](http://www.greenteapress.com/compmod/) - Allen B. Downey
 
 ####Operating systems
 * [The Art of Unix Programming](http://catb.org/esr/writings/taoup/html/)
@@ -165,9 +169,7 @@
 * [Is Parallel Programming Hard, And, If So, What Can You Do About It?](http://kernel.org/pub/linux/kernel/people/paulmck/perfbook/perfbook.html)
 
 ####Software Architecture
-* [The Architecture of Open Source Applications](http://www.aosabook.org/en/index.html)
-* [The Performance of Open Source Applications](http://aosabook.org/en/)
-* [Programming Pearls](http://cs.bell-labs.com/cm/cs/pearls/)
+
 * [Seamless Object-Oriented Software Architecture](http://www.bon-method.com/book_print_a4.pdf)
 * [Summary of the GoF Design Patterns](http://domaindrivendesign.org/sites/default/files/discussion/PatternSummariesUnderCreativeCommons.doc)
 * [How to write Unmaintainable Code](http://mindprod.com/jgloss/unmain.html)
@@ -179,10 +181,19 @@
 * [Best Kept Secrets of Peer Code Review](http://smartbear.com/codecollab-code-review-book.php)
 * [Domain Driven Design Quickly](http://www.infoq.com/minibooks/domain-driven-design-quickly)
 * [Essential Skills for Agile Development](http://elliottback.com/wp/essential-skills-for-agile-development/)
-* [The Cathedral and the Bazaar](http://www.catb.org/esr/writings/cathedral-bazaar/)
 * [Guide to the Software Engineering Body of Knowledge](http://www.computer.org/portal/web/swebok)
 * [Programming Reliable Systems (Joe Armstrong's PhD thesis)](http://www.sics.se/~joe/thesis/armstrong_thesis_2003.pdf)
+* [How to Design Programs](http://www.htdp.org/)
+* [NASA Manager Handbook for Software Development](http://homepages.inf.ed.ac.uk/dts/pm/Papers/nasa-manage.pdf) (PDF)
+* [NASA Software Measurement Handbook](http://www.scribd.com/doc/7181362/NASA-Software-Measurement-Guidebook)
+* [Don't Just Roll the Dice](http://www.neildavidson.com/dontjustrollthedice.html)
+
+####Open Source Ecosystem
+* [Getting started with Open source development](http://public.dhe.ibm.com/software/dw/db2/express-c/wiki/Getting_started_with_open_source_development_p2.pdf) (PDF)
 * [Producing Open Source Software](http://producingoss.com/)
+* [The Cathedral and the Bazaar](http://www.catb.org/esr/writings/cathedral-bazaar/)
+* [The Architecture of Open Source Applications](http://www.aosabook.org/en/index.html)
+* [The Performance of Open Source Applications](http://aosabook.org/en/)
 
 ####Information Retrieval
 * [Introduction to Information Retrieval](http://nlp.stanford.edu/IR-book/information-retrieval-book.html)
@@ -196,17 +207,16 @@
 * [Mathematical Logic - an Introduction](http://www.ii.uib.no/~michal/und/i227/book/book.pdf) (PDF)
 * [Bayesian Methods for Hackers](https://github.com/CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers)
 * [Mathematics for Computer Science](http://ocw.mit.edu/courses/electrical-engineering-and-computer-science/6-042j-mathematics-for-computer-science-fall-2010/readings/)
+* [Category Theory for Computing Science](http://www.math.mcgill.ca/triples/Barr-Wells-ctcs.pdf)
+* [Essentials of Metaheuristics](http://cs.gmu.edu/~sean/book/metaheuristics/) by Sean Luke
 
 ####Misc
 * [97 Things Every Programmer Should Know](http://programmer.97things.oreilly.com/)
 * [97 Things Every Programmer Should Know - Extended](https://leanpub.com/97-Things-Every-Programmer-Should-Know-Extended)
-* [How to Design Programs](http://www.htdp.org/)
 * [How to Think Like a Computer Scientist](http://openbookproject.net/thinkcs/)
 * [I Am a Bug](http://www.amibug.com/iamabug/p01.html)
 * [Learn to Program](http://pine.fm/LearnToProgram/)
 * [Foundations of Programming](http://codebetter.com/files/folders/codebetter_downloads/entry179694.aspx)
-* [Programming Methodology](http://www.stanford.edu/class/cs106a/cgi-bin/handouts/)
-* [Category Theory for Computing Science](http://www.math.mcgill.ca/triples/Barr-Wells-ctcs.pdf)
 * [Communicating Sequential Processes (PDF)](http://www.usingcsp.com/cspbook.pdf) - Tony Hoare
 * [Come, Let's Play: Scenario-Based Programming Using Live Sequence Charts](http://www.scribd.com/doc/175241338/Come-Let-s-Play)
 * [Computer Musings](http://scpd.stanford.edu/knuth/index.jsp) (lectures by Donald Knuth)
@@ -215,22 +225,14 @@
 * [Designing Interfaces](http://designinginterfaces.com) by Jennifer Tidwell
 * [Digital Signal Processing For Engineers and Scientists](http://www.dspguide.com/)
 * [Distributed systems for fun and profit](http://book.mixu.net/distsys/single-page.html)
-* [Don't Just Roll the Dice](http://www.neildavidson.com/dontjustrollthedice.html)
-* [Essentials of Metaheuristics](http://cs.gmu.edu/~sean/book/metaheuristics/) by Sean Luke
-* [A Field Guide To Genetic Programming](http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/toc.html)
 * [Flow based Programming](http://jpaulmorrison.com/fbp/#book)
 * [Getting Real](http://gettingreal.37signals.com/)
-* [Getting started with Open source development](http://public.dhe.ibm.com/software/dw/db2/express-c/wiki/Getting_started_with_open_source_development_p2.pdf) (PDF)
 * [Modeling Reactive Systems with Statecharts](http://www.scribd.com/doc/167971960/Modeling-Reactive-Systems-With-Statecharts)
-* [NASA Manager Handbook for Software Development](http://homepages.inf.ed.ac.uk/dts/pm/Papers/nasa-manage.pdf) (PDF)
-* [NASA Software Measurement Handbook](http://www.scribd.com/doc/7181362/NASA-Software-Measurement-Guidebook)
 * [PNG: The Definitive Guide](http://www.libpng.org/pub/png/book/)
 * [Pointers And Memory](http://cslibrary.stanford.edu/102/PointersAndMemory.pdf)
 * [Project Oberon](http://www-old.oberon.ethz.ch/WirthPubl/ProjectOberon.pdf) (PDF)
 * [Security Engineering](http://www.cl.cam.ac.uk/~rja14/book.html)
 * [Small Memory Software](http://www.smallmemory.com/book.html)
-* [The Art of Computer Programming](http://www.cs.utsa.edu/~wagner/knuth/) (fascicles, mostly volume 4)
-* [Think Complexity](http://www.greenteapress.com/compmod/) - Allen B. Downey
 * [Introduction to High-Performance Scientific Computing](http://tacc-web.austin.utexas.edu/veijkhout/public_html/istc/istc.html) - Victor Eijkhout